Genomics, and precision health approaches such as big data science and machine learning have emerged as important tools for public health. Those entering the public health and medical workforces must keep pace with these evolving fields to maximize the benefit to public health. Recognizing this need, ORISE is partnering with the Office of Genomics and Precision Public Health at the CDC to offer a two-day enrichment event covering the latest developments in these fields. The course is a series of 15-60 minute lectures, grouped by topic, with learning objectives for each lecture.
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Catalog
Genomics and Precision Public Health Training Course
Presentation
Introduction to Interoperability, Standards and the Role of the Public Health Domain expert
Presentation
Introduction to Interoperability, Standards and the Role of the Public Health Domain expert
Year released: 2022
TEFCA Overview and Perspectives From the Field
Presentation
This presentation aims to introduce the Trusted Exchange Framework and Common Agreement (TEFCA) in the context of public health participation in TEFCA-based data exchange. It features panelists who discuss how they envision their health agency benefiting from TEFCA and how they are preparing to participate. You will also learn more about the legal and policy considerations around TEFCA.
Year released: 2024
Duration: 1 hour 20 minutes
LOINC & NBS INBSI
Presentation
In the LOINC Primer for Newborn Screening we provide an introduction to LOINC, with a focus on its applications in the newborn screening space. We review how LOINCs are made, how to find the right code for your specific test, and a few cases of what not to do.
Year released: 2022
Duration: 18 Minutes
Webinar: Introduction to FHIR for Research
Toolkit
Introduction to FHIR for Research is a three-hour training course that aims to provide NIH research scientists and program officers with an understanding of how FHIR could impact their research, and how they can take advantage of it. This webinar covers the background and context of FHIR, what data and tools are available, and examples of research using FHIR. It is broken into three parts:
Part 1: Background and Context of FHIR
This section provides essential background and context on FHIR, including the history and evolution of the standard, its relation to similar frameworks, and its components and data structure.
Part 2: The FHIR Ecosystem
After discussing FHIR background, we'll next turn to discussing the broader ecosystem of FHIR systems and capabilities practitioners can hope to leverage. This section will explore the extent of systems, tools, and applications available to users.
Part 3: Working with FHIR
We will now explore a detailed set of applications for FHIR starting with a sampling of recent FHIR uses in both industry and academia. We will then provide a series of case studies leveraging both Python and R to demonstrate how FHIR can be used to extract and utilize medical data.
Year released: 2023
Duration: 2 hours 58 minutes
Logic Modeling
Presentation
An introduction to logic modeling and how it may be used by public health programs.
Year released: 2022
Duration: 17 minutes
Interoperability- Overcoming the Overwhelming
Presentation
In this presentation we hear from Laura Pabst who leads birth defects and neonatal abstinence syndrome surveillance at CDC. This episode follows her journey into the work of interoperability and her hopes for the future of interoperability.
Year released: 2022
Duration: 15 minutes
The Trusted Exchange Framework and Common Agreement - TEFCA
Presentation
This presentation is a review of the Trusted Exchange Framework and Common Agreement (TEFCA) and its relationship to public health. The recording is a presentation to the Tennessee Informatics Community of Practice.
Year released: 2023
Duration: 1 hour 2 minutes
Data Modernization Planning Toolkit
Toolkit
The Data Modernization Planning Toolkit supports Epidemiology and Laboratory Capacity (ELC) for Prevention and Control of Emerging Infectious Diseases recipients in planning data modernization ventures at health departments. This guide will help build leadership and partner buy-in for data modernization work and assist health departments in developing plans that prioritize data modernization activities.
Year released: 2022
Baby Steps Toward Defining the HL7 Message
Toolkit
This document is a companion to Section 1D of the Building Blocks Guide. It describes the steps required for HL7 message definition and provides additional information on the tools and topics discussed in the Guide, including the Implementation Workbook and the Message Validation Template.
Year released: 2018
FHIR 101
Presentation
A first-time attendee video for the HL7 FHIR Connectathon describes hands-on FHIR development and testing. The first two hours focus on an overview of FHIR, profiling, and implementation guides. The third hour is focused on what to expect at HL7 FHIR Connectathons. Time stamps for specific topics are provided below:
FHIR 101
6:10 FHIR Timeline
13:04 Regulatory drivers behind FHIR
13:35 Basics of FHIR (Overview)
15:45 Benefits of FHIR
17:35 Navigating the Specification
20:00 Resources
22:50 Profile
24:45 Extensions
26:45 FHIR Operations
28:00 Terminology
29:05 Modules
30:30 Scenario Example
32:30 Resource Content
34:20 Terminology Bindings
35:30 Search Parameters
36:10 Example Resource
37:30 References between Resources
40:15 Structure and Coding
41:40 Value Sets
43:00 Profiling
44:30 REST and APIs, SMART on FHIR
47:50 CDS Hooks
48:50 Bulk Data Access
49:00 CQL
How to Read an IG
53:00 Why do we need implementation guides?
54:00 What is an FHIR Implementation Guide?
54:50 Navigating the FHIR Implementation Guide
58:40 Homepage
59:40 Framework/Guidance
1:00:00 Use Cases/ Examples
1:02:50 FHIR Artifacts
1:04:10 Profiles
1:09:30 Slicing
1:10:45 Conformance
1:12:00 Terminologies
1:13:50 Operations
1:16:10 Capability Statement
1:18:25 Tips and Tricks
1:22:00 Where do you find FHIR IGs?
US Core Profiles
1:27:40 Cures Act Final Rule
1:29:00 Argonaut Project
1:32:10 US FHIR Core
1:34:30 Argonaut vs US Core
1:36:00 Profile-less FHIR
1:39:30 Profile Deep Dive
1:43:00 US Core Patient
1:44:50 Value Sets
1:47:30 US Core Capability Statement
1:48:30 Extensions
1:49:00 US Core and USCDI
1:51:45 Standards Version Advancement Process (SVAP)
1:54:00 USCDI ONDEC
1:55:20 Journey to US Core
2:01:30 Inferno
2:02:30 Future of Argonaut and US Core
2:04:50 Data vs Narrative
FHIR Testing, Tools, and Heading to a Connectathon
2:11:15 Interoperability Challenges
2:13:00 The 5 “Ws”
2:23:50 Testing with Touchstone
2:42:20 Connectathon Testing Experience
Year released: 2021
Duration: 3.5 Hours
FHIR Bulk Data API
Presentation
Healthcare organizations have many reasons for bulk-data export, such as populating a data warehouse for operational or clinical analytics, leveraging population health and decision support tools from external vendors, and submitting data to registries and regulatory agencies. Today, bulk export is often accomplished with proprietary pipelines, and data transfer operations frequently involve an engineering and field mapping project. Learn about an exciting new effort by SMART and HL7 to bring the FHIR standard to bear on these challenges of bulk-data export.
Year released: 2019
Duration: 42 Minutes
An Overview of the Onboarding Process
Presentation
In this presentation, we will go over the process for onboarding a data submitter for HL7-based interoperability.
Year released: 2022
Duration: 10 Minutes
The Interoperability Testing Process
Presentation
This presentation will describe why testing is critical to the success of an interoperability project. We will review the different types of testing that are commonly performed during a project in more detail. Also, we will provide some tips and tricks to make your testing more successful.
Year released: 2022
Duration: 27 Minutes
Introduction to lab orders (LOI) and results (LRI) IGs
Presentation
This presentation reviews the history of the laboratory orders (LOI) and results (LRI) implementation guides in general, some of the common aspects shared between them and how these standards are used together
Year released: 2022
Duration: 23 Minutes
Common features to lab orders (LOI) and results (LRI) IGs
Presentation
This presentation discusses how the laboratory orders (LOI) and results (LRI) implementation guides are written and some of the ways they are different from other v2 standards.
Year released: 2022
Duration: 14 Minutes
Vocabulary for lab orders (LOI) and results (LRI) IGs
Presentation
This presentation discusses how the values sets used by the laboratory orders (LOI) and results (LRI) implementation guides are documented.
Year released: 2022
Duration: 11 Minutes
Lab orders (LOI) messages
Presentation
This presentation describes the use cases encompassed by the laboratory orders (LOI) implementation guide and details some of the unique features of the profiles defined in the standard.
Year released: 2022
Duration: 31 Minutes
Lab results (LRI) concepts
Presentation
This presentation describes the use case encompassed by the laboratory results (LRI) implementation guide and details some of the unique concepts in the standard including snapshot mode and parent-child linkages
Year released: 2022
Duration: 17 Minutes
Lab Results (LRI) profiles
Presentation
This presentation describes some of the technical constraints included in the profiles used by the laboratory results (LRI) implementation guide.
Year released: 2022
Duration: 26 Minutes
Applying FHIR® to STLT Public Health PHFIC #1
Presentation
Resources resulting from a Public Health FHIR Implementation Collaborative workshop include a high-level overview of FHIR, a more in-depth review of the rules, regulations, and policy framework behind interoperability, and a workshop summary.
Year released: 2022
Duration: 24 minutes
Why Clinical Terminology Matters Presentation
Presentation
A short history of experience in recording clinical ideas in computer systems over the past forty years. This sets the context for the requirements associated with the adoption and development of SNOMED CT.
Year released: 2019
Duration: 33 Minutes
Introduction To SNOMED CT
Presentation
This presentation provides general information about the background and nature of SNOMED CT.
Year released: 2021
Duration: 16 Minutes
TEFCA Overview
Presentation
This presentation provides an overview of the Trusted Exchange Framework and Common Agreement (TEFCA) which has the overall goal to establish a floor of universal interoperability across the country. The Common Agreement will establish the infrastructure model and the governing approach for users in different networks to securely share basic clinical information with each other—all under commonly agreed-to expectations and rules.
Year released: 2022
Duration: 60 Minutes
Informatics Workforce Position Classifications and Descriptions
Toolkit
Four template job descriptions covering Executive, Management, Clinical and Professional roles. These may be a good starting point for putting together job descriptions for your program.
Year released: 2014
Fishbone Diagram (Cause and Effect)
Presentation
A fishbone diagram helps team members visually diagram a problem or condition's root causes, allowing them to truly diagnose the problem rather than focusing on symptoms.
Introduction to HL7 Study Guide
Presentation
In this training, we'll cover interoperability, the background and history of HL7, and the main HL7 standards that are used in public health. By the end of this video, you will be able to: define interoperability, distinguish between syntactic and semantic interoperability, examine the history
Year released: 2021
Duration: 14 Minutes
Getting Started With Authoring with RCKMS
Presentation
The Reportable Conditions Knowledge Management System (RCKMS) is a real-time portal to enhance disease surveillance by providing comprehensive information on public health reporting criteria. Learn about authoring in the RCKMS.
Year released: 2020
Duration: 29 Minutes
Reportable Conditions Knowledge Management System (RCKMS) Authoring The Big Picture
Presentation
The Reportable Conditions Knowledge Management System (RCKMS) is a real-time portal to enhance disease surveillance by providing comprehensive information on public health reporting criteria. Hear an overview about authoring in the RCKMS.
Year released: 2020
Duration: 18 Minutes
The Difference Between eCR and Traditional Case Reporting
Presentation
Learn the difference between eCR and traditional case reporting. See how eCR is a faster process to receive and send more complete data.
Year released: 2021
Duration: 3 Minutes
A General Introduction to FHIR
Presentation
A General Introduction to FHIR, presented by Richard Ettema at HL7 FHIR DevDays, June 2018, Boston, MA
Year released: 2018
Duration: 45 Minutes
Introduction to the FHIR specification
Presentation
The interoperability of data, and delivery of a consistent level of data quality, are critical factors in the National Digital Health Strategy – both for quality of immediate care, and for the development of longer-term health strategies. This is the first of a three-part webinar series looking at interoperability and clinical terminologies, with a particular focus on the Fast Healthcare Interoperability Resources (FHIR), a key standard for interoperable data in Australia.
Year released: 2018
Duration: 43 Minutes
Terminology Fundamentals - FHIR Implementation Guide Creation Training
Presentation
Year released: 2019
Duration: 1 Hour 15 Minutes
Understanding LOINC concepts and uses
Presentation
This two-part presentation 1)provides content on: the History of LOINC as an organization and a community of users; a definition of LOINC and LOINC code basics; the LOINC concept model; the six LOINC axeses; and resources for learning more about LOINC. 2) an overview of a typical mapping project using LOINC.
Year released: 2020
Duration: 1 Hour
Newborn Screening Interoperability Standards
Presentation
In this presentation, we will define use case in an implementation guide, go over an HL7 v2 message, and review each of the newborn screening standards that exist today.
Year released: 2021
Duration: 25 Minutes
Change Management and Stakeholder Engagement for Interoperability Efforts in Newborn Screening
Presentation
Year released: 2021
Duration: 52 Minutes
NIST - General Validation Tool
Presentation
Year released: 2021
Duration: 13 Minutes
Using the NIST v2 authoring and validation tools
Presentation
In this presentation, we provide an overview of the suite of tools developed by the National Institute for Standards and Technology to document v2 standards & test cases and to validate test messages against those requirements.
Year released: 2021
Duration: 7 Minutes
How to Read a v2 Implementation Guide - Profiles
Presentation
In this presentation, we will see how IG authors use profiles to add specific rules and constraints to the base standard to achieve the goals of the IG's use case.
Year released: 2021
Duration: 24 Minutes
How to Read a v2 Implementation Guide - Vocabulary and Data Types
Presentation
In this presentation, we will examine some building blocks of the v2 IG, vocabulary, and data types.
Year released: 2021
Duration: 17 Minutes
How to Read a v2 Implementation Guide - Setting the Context
Presentation
In this presentation, we will look at the first sections of a v2 implementation guide to see how the documents set the context for interoperability.
Year released: 2021
Duration: 11 Minutes
Acknowledgment Messages - Part 3
Presentation
This video presentation reviews how the authors of the existing newborn screening implementation guides describe the use of Acknowledgment messages. We also discuss the use of common error codes as a way to simplify addressing errors in processing.
Year released: 2021
Duration: 19 Minutes
Acknowledgment Messages - Part 2
Presentation
This video presentation goes into more detail about how the HL7 v2 standard permits the use of Acknowledgment messaging. We also look at how the use of intermediaries impacts Acknowledgment message flow.
Year released: 2021
Duration: 25 Minutes
Acknowledgment Messages - Part 1
Presentation
This video presentation introduces the idea of using HL7 v2 Acknowledgment messages to communicate with data submitters. Acknowledgments are an important way to let submitters know when a message is processed and if any errors were encountered during processing.
Year released: 2021
Duration: 21 Minutes
Project US@
Presentation
Year released: 2021
Duration: 7 Minutes
The ISA
Presentation
This short presentation describes the ONC's Interoperability Standards Advisory and how it gets updated
Year released: 2021
Duration: 7 Minutes
FHIR Resource Walk Through
Presentation
This video presentation will explore the details of how FHIR resources are defined and used. We'll walk through examples to see how the FHIR standard is implemented to exchange real-world data.
Year released: 2021
Duration: 29 Minutes
Introduction to FHIR
Presentation
This video presentation will review the latest HL7 interoperability standard, FHIR. We'll put FHIR into context relative to other HL7 products and examine how FHIR defines resources to represent a variety of different healthcare entities and events. We'll also discuss how Public Health programs
Year released: 2021
Duration: 18 Minutes
The HL7 Product Families
Presentation
In this presentation, we will be introducing the different HL7 product families that are used to exchange clinical data.
Year released: 2021
Duration: 12 Minutes
Structure of a v2 HL7 message
Presentation
In this presentation, we will discuss the different message types and their trigger events. Then we will go over the structure of an HL7 Version 2 message.
Year released: 2021
Duration: 15 Minutes
Navigating the v2 Base Standard
Presentation
n this presentation we will explore the location, organization and content of the v2 base standard.
Year released: 2021
Duration: 26 Minutes
What is HL7?
Presentation
In this presentation, we will describe the purpose and organization of the Health Level 7 (HL7) standards development organization
Year released: 2021
Duration: 12 Minutes
Introduction to Standards
Presentation
In this presentation, we will give an introduction to standards. We review what standards are, why they are important, and how they are developed and implemented.
Year released: 2021
Duration: 9 Minutes
Introduction to Interoperability
Presentation
In this presentation, we introduce interoperability. We define important terms and building blocks for achieving interoperability in Newborn Screening programs.
Year released: 2021
Duration: 13 Minutes
Evaluation for Public Health Informatics
Presentation
Evaluation in the context of public health informatics and discuss why evaluation is necessary
Year released: 2018
Duration: 36 Minutes
Key Concepts and Terminology in Public Health Informatics
Presentation
Definition and value proposition for Public Health informatics
Year released: 2018
Duration: 1 Hour
Communicating the Value of Public Health Informatics
Presentation
Communicating the Value of Public Health Informatics
Year released: 2018
Duration: 41 Minutes
Health IT Implementation Guide and Toolkit
Toolkit
Guidance for initiating and sustaining this project and outlines steps needed to set up electronic messaging with partners
FHIR Overview for Birth Defect Reporting
Presentation
An overview of the FHIR interoperability standard and how it may be applied to a Public Health use case
Year released: 2020
Duration: 1:00:44